Many Microbe Microarrays Database |
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| Many Microbe Microarrays Database (M3D) is a resource for analyzing and retrieving gene expression data for microbes. The database currently contains Affymetrix expression compendia for Escherichia coli, Saccharomyces cerevisiae, and Shewanella oneidensis. |
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| CURRENT CONTENT |
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| Species: | E. coli | S. cerevisiae | S. oneidensis |
| Number of Experiments: | 466 | 904 | 207 | | Number of Chips: | 907 | 904 | 245 |
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| GETTING STARTED |
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| Click on the Analysis tab and select a compendium. For further instructions, click the Help tab. |
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| NEWS |
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| Sept 3, 2009 | E_coli_v4_Build_6 is now available with 182 new chips and 90 new experiments. |
| June 23, 2008 | E_coli_v4_Build_5 and S_oneidensis_v4_Build_2 are now available bringing the number of chips in M3D to over 1,500. |
| Dec 20, 2007 | E_coli_v4_Build_4 is now available bringing the number of E. coli chips from 524 to 612. |
| Nov 6, 2007 | Interactive M3D scatterplots can now be embedded in external websites. Try it out on the plot below. See the Help tab for instructions on how you can include this type of plot on your own website. |
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| PLEASE CITE |
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When using data from M3D in a publication please cite:
Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, and Gardner TS. Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. Nucleic Acids Research |
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| COMMENTS AND SUGGESTIONS |
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| If you have features you'd like to see added to M3D, email Jeremiah (faith@bu.edu) or preferably add a comment on this blog post about M3D. Please report bugs to faith@bu.edu |
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| NETWORK INFERENCE MOVED |
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| If you're looking for software and other information about network inference, it has been moved to another site to keep the focus of M3D on microarray expression data download and visualization. |
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