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Raw Data Download
Raw data refers to the probe level expression intensities (stored in .CEL files). Affymetrix genechips have many different short oligonucleotides that match a particular gene. These probe intensities are combined to produce a final expression level for the gene. Unless you are developing background subtraction/normalization software or you want to normalize the data with a method that we don't provide, you probably don't want to download the .CEL files. Please contact faith@bu.edu for downloading instructions.
 
Normalized Data Download
Tab-delimited files with all genes, all genes + intergenic regions, and all probes are provided below (for both averaged and non-averaged replicates). If you want to make your own custom dataset by selecting particular genes and conditions, you can do so in the Analysis section.
 
RMA normalized data for all genes
Download normalized data for all genes for each build