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S_oneidensis_v4_Build_2 (About)
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Project
Reference
Date
Description
BU0
2005-11-17
aerobic and anaerobic incubation with 2 e-donors and 2 e-acceptors, at an estimated starting inocolum of OD600 0.1, in triplicate
BU1_donors
2006-03-18
Aerobic growth with six electron donors shaking, incubated for 7 hrs
BU2_aerobic_factorial
2006-04-04
A set of experiments with varying media components, grown aerobically
BU3_growth_phase
2006-03-23
Growth curve experiments
BU4_factorial
2006-03-30
Factorial design varying aeration, temperature, pH, e-donor (glucosamine / inosine), e-acceptor (fumarate / TMAO), and salt
BU5_acceptors
2006-04-04
Growth with inosine and NADG with 7 e-acceptors incubated for 7 hours
BU6
2006-08-11
A test of 6 Shewanella microarrays primarily testing the effectiveness of an alternate RNA stop solution as compared to the standard use of RNAprotect from Qiagen.
BU7
2006-08-18
Cross experiment of five food sources by no stress, hydrogen peroxide, and added salt stresses
BU8
2006-08-18
Cross experiment in minimal media of pH 6,7,and 8 media crossed by ambient and 27 C temperature.
BU9
2006-09-14
Testing RNA yield as a function of time in an anaerobic environment
BU10
2007-03-02
Set of 3 samples sent by Josie Yu of the Spormann Lab testing cyclic-di-GMP levels
BU11
2006-09-26
Factorial design testing light conditions, ammonium, hydrogen peroxide, phosphate, salt, nitrate, lactate/NADG, and fumarate/TMAO
BU12
2006-09-26
Factorial design testing various levels of
BU16
2007-06-10
Set of 6 chips run on samples prepared with different RNA isolation methods
BU20
2007-03-12
Set of 3 chips with varying temperature and osmolarities
BU21
2007-03-14
BU21_LoTempOsmo
BU22a
2007-03-14
A set of six arrays with combinations of adenosine, pyruvate, and glucosamine
BU22
2007-03-14
A set of 20 arrays with combinations of adenosine, pyruvate, and glucosamine under various culture conditions
BU23_pH_osmo
2007-03-29
An incomplete full factorial design with two-level factors of pH, osmolarity, temperature, and aeration
BU24_thiosulfate
2007-05-08
Two experiments of thiosulfate exposure following anaerobic growth in either nitrate or fumurate
BU26_media_zoo
2007-03-29
A set of 7 experiments grown anaerobically with various donors, acceptors, and M4 media components
BU28_MnO
2007-05-17
Manganese oxide exposure following anaerobic growth with fumarate
PNL_anaerobic_shift
2005-06-01
wild-type grown in a bioreactor in modified SF Minimal Media, time-series transition from aerobic w/ lactate to anaerobic w/ lactate
PNL_crp
2006-02-01
crp-knockout strain and wild-type grown in a bioreactor in modified SF Minimal Media, time-series transition from aerobic w/ lactate to anaerobic w/ fumarate
FedEx2_Lactate
2006-03-30
Continuous growth in Bioreactors comparing aerobic versus oxygen-limited conditions, with lactate as the electron donor in minimal media
FedEx2_Acetate
2007-05-12
Continuous growth samples in Bioreactors comparing aerobic versus oxygen-limited growth on acetate
