Experiment Selection Page

Current Dataset

Current Compendium	E_coli_v4_Build_6 (About)
Number of Genes	0 (Add)
Number of Experiments	0 (Add)
Reference Condition	none (Add)

Choose experiments by project [?] \| Choose individual experiments \| Choose experiments by condition


Click this link to select all projects

	Project	Reference	Date	Description
	upregulation_low_norfloxacin	Reference	2004-04-27	12 overexpression perturbations (dinl, dinP, lexA, lon, luciferase, mazF, recA, relE, ruvA, sulA, umuD, uvrA) in LB with 0.025ug/ul norfloxacin antibiotic.
	upregulation_high_norfloxacin	Reference	2004-08-29	overexpression of 45 different genes in LB with 0.0075ng/ml norfloxacin
	misc_norfloxacin	Reference	2004-06-12	various doses of norfloxacin, some in a recA knockout, some in a strain with a luciferase upregulation
	norfloxacin_time_series	Reference	2004-03-24	Time-series data from a Norfloxacin perturbation. Samples from perturbed cultures were taken at 12, 24, 36, 48, and 60min. Unperturbed samples were taken at 0, 24, and 60min.
	ccdB_upregulation	Reference	2004-12-01	ccdB (a protein toxin) was upregulated in different E.coli cell lines
	palsson04	Reference	2004-05-06	14 different conditions (wildtype anaerobic, wildtype aerobic, five knockouts and a double knockout all anaerobic and aerobic)
	palsson03	Reference	2003-11-01	E. coli subject to 20 different conditions (wildtype anaerobic, heat shock, acid shock, drugs, five knockouts and different growth phases)
	metabolic_burden_response	Reference	2004-08-06	Four synthetic polypeptides were designed to determine the effect of recombinant protein expression on global gene expression patterns
	carbon_foraging	Reference	2005-04-22	Global gene expression of Escherichia coli growing on succinate
	amber_suppressor_tRNA	Reference	2004-10-01	MG1655 grown in MOPs minimal media with and without expression of an amber suppressor tRNA
	fnr_deletion	Reference	2004-06-10	Comparison of gene expression, between wild-type and an isogenic FNR deletion mutant, during shift from aerobic to anaerobic growth conditions in glucose minimal medium.
	recombinant_fermenter	Reference	2005-03-01	Study of the effect of recombinant protein expression from IPTG inducible promoter
	cybercell	Reference	2004-02-03	aerobic, anaerobic, and anaerobic with nitrate on MOPS media in stationary or log phase
	LB_with_glucose	Reference	2005-06-27	different growth phases in LB with low or high glucose supplement
	ph_response	Reference	2004-07-30	Five replicates at pH 5.0, 7.0, and 8.7 in LBK.
	norfloxacin_ccdB_chelator	Reference	2007-03-13	contains four strains, recA knockout, norfloxacin, ccdB toxin expression, and o-phenanthroline chelator
	antibiotic_time_series	Reference	2007-08-07	contains MG1655 time-series data with four antibiotics (ampicillin, kanamycin, norfloxacin, and spectinomycin)
	ph_response_anaerobic	Reference	2004-07-30	Five anaerobic replicates at pH 5.7, 7.0, and 8.5 in LBK.
	biofilm_indole_effect	Reference	2007-05-15	biofilm growth of various knockouts some with addition of indole and DMF
	fis_knockout	Reference	2007-05-15	fis knockout over several growth phases
	fermentor_and_cecum	Reference	2007-07-20	MG1655 anaerobic and aerobic in fermentor; plus 24 in mouse cecum
	temporal_biofilm	Reference	2007-02-01	samples from biofilm on glass wool and from suspension around the glass wool
	luxS	Reference	2004-12-01	luxS knockouts with +/- glucose
	stringent_response		2008-01-28	Induction of stringent response by serine hydroxamate, valine overdose and RelA overexpression
	ymgB_biofilm	Reference	2007-10-12	BW25113 ymgB and W/T in LBglu 24h biofilm cells
	yncC_biofilm		2007-08-06	E. coli BW25113 yncC vs wt biofilm cells in LB 15h 37C
	tannin_resistance	Reference	2008-01-01	Tannin resistance strategies of Escherichia coli in anaerobic conditions
	rpoS_exponential	Reference	2008-03-01	RpoS regulation of gene expression during exponential growth of E. coli K-12
	rpoS_stationary	Reference	2004-12-01	RpoS regulation of gene expression during stationary phase of E. coli K-12
	gentamicin_time_series		2007-12-01	time course gentamicin, spectinomycin, and control
	ydgG_biofilm	Reference	2006-01-01	comparison of wild-type and mutant ydgG in biofilm
	yliH_yceP_biofilm	Reference	2006-04-01	yliH and yceP biofilm expression relative to wild type
	ycfR_biofilm	Reference	2007-04-01	mutant ycfR biofilm vs wild type 15 hr LB glu biofilm cells
	rapid_acid_response	Reference	2008-02-26	Acid-Shifted Time Course of Gene Expression Profiles of Aerobically Grown Escherichia coli K-12
	hydrogen_production	Reference	2007-05-23	E. coli TG1/pBS(Kan)Synhox and pBS(Kan) hydrogen production
	biofilm_R1_plasmid	Reference	2008-05-01	E. coli K-12 wild type with R1drd19 biofilm vs wild type without R1drd19 biofilm
	rpoS_biofilm	Reference	2008-04-15	Expression of E. coli MG1655 wild type and rpoS knock-out strains in biofilm and planktonic cultures
	human_hsp	Reference	2008-06-06	mutant human hsp60 in E. coli
	biofilm_indole_temp	Reference	2008-06-05	biofilm and suspension E. coli exposed to indole at 30C
	ryhB_iron	Reference	2005-08-31	Effect of small RNA RyhB on global iron use in Escherichia coli
	RM_cell_death	Reference	2009-03-01	Expression profiles during cell death programmed by a restriction-modification system in E. coli
	cefsulodin_mecillinam	Reference	2008-03-01	Expression of Escherichia coli treated with beta-lactam antibiotics cefsulodin and mecillinam, alone and in combination
	biofilm_hha	Reference	2008-06-11	BW25113 hha mutant vs wild type biofilm cells 4hr LB and 4,15,24hr LB glu
	HU_regulon	Reference	2009-02-04	Identification of the Escherichia coli HU regulon
	rpoS_minimal_media	Reference	2009-01-01	Control of RpoS in global gene expression of Escherichia coli in minimal media
	biofilm_formation	Reference	2009-06-01	Gene expression of E. coli MG1655 at attachment, colony formation and maturation during biofilm formation
	high_density_serine_hydrox	Reference	2009-05-01	Serine hydroxamate and the transcriptome of high cell density recombinant E. coli MG1655
	high_density_heat_shock	Reference	2006-10-01	Serine hydroxamate and the transcriptome of high cell density recombinant E. coli MG1655
	dilution_series_rich_media		2006-06-09	2 replicate series of 8 timepoints of exponential to stationary phase coli planktonic cultures growing in rich medium
	F_plasmid_study	Reference	2008-09-12	Transcription profiling of E. coli biofilm to assess the global gene impact of a natural F conjugative plasmid-carrying E.coli biofilm