Many Microbe Microarrays Database

Many Microbe Microarrays Database (M^3D) is a resource for analyzing and retrieving gene expression data for microbes. The database currently contains Affymetrix expression compendia for Escherichia coli, Saccharomyces cerevisiae, and Shewanella oneidensis.

CURRENT CONTENT
Species:	E. coli	S. cerevisiae	S. oneidensis
Number of Experiments:	305	247	14
Number of Chips:	612	530	14

GETTING STARTED

Click on the Analysis tab and select a compendium. For further instructions, click the Help tab.

NEWS

Dec 20, 2007

E_coli_v4_Build_4 is now available bringing the number of E. coli chips from 524 to 612.

Nov 6, 2007

Interactive M^3D scatterplots can now be embedded in external websites. Try it out on the plot below. See the Help tab for instructions on how you can include this type of plot on your own website.

Oct 23, 2007

A blog post discussing the future of M3D and the future of expression data in general is available at J's blog.

Sept 18, 2007

A manuscript describing M^3D is now available at Nucleic Acids Research.

Sept 7, 2007

E_coli_v4_Build_3 is now available and brings the total number of E. coli arrays up to 524.

PLEASE CITE

When using data from M^3D in a publication please cite:
Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, and Gardner TS. Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. Nucleic Acids Research

COMMENTS AND SUGGESTIONS

If you have features you'd like to see added to M^3D, email Jeremiah (faith@bu.edu) or preferably add a comment on this blog post about M3D. Please report bugs to faith@bu.edu

NETWORK INFERENCE MOVED

If you're looking for software and other information about network inference, it has been moved to another site to keep the focus of M^3D on microarray expression data download and visualization.